R Programs

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The Topic / Procedure Page
R code - text data file
Different chi-squared distributions   chisqdistributions.R
Binomial Likelihood  
Simple Binomial Calculations in R
2.3.2
Basic Poisson Calculations in R
2.3.1

Goodness-of-Fit Test: Cell Probabilities Functions of Unknown Parameters

2.7
Creates a table of one-way frequencies for observations of a die and then finds calculates a one-way chi-square test 2.5
Binomial test of proportions
2.3.2
Poisson sampling and goodness of fit with one-way table
Datafile:  soccer2002.txt
2.3.1
Goodness of fit with X2 with G2
2.5
Test of independence, and measures of associations for a 2 × 2 table 3.1.5
Test of independence, and measures of associations for an I × J table

3.2.1

4.1.1

Test of independence, and measures of associations for an I × J table; simple data visualization
3.2.3
Enters tea tasting data and performs one-sided and two-side Fisher's exact test for count data. 3.3
Enters the voters data and performs McNemar's test for 2 × 2 tables 4.2.3
Cohen's kappa 4.2.5
Takes the marginal counts specified for by each parameter and using these to estitmate the contents of a specific cell. This is used to test for mutual independence. Also for other independence models. 5.3
Test for various independence models in a 3-way table 5.4.1

Tests for various independence models in a 3-way table (Datafile: berkeley.txt)

Loglinear models

Simpson's paradox

5.4.6
Logistic Regression for 2-way tables  6.2.2
Logistic Regression for 3-way tables  6.3.1
Logistic Regression with continuous covariates  7.1.1
ROC analysis, plot the ROC curve and a Hosmer-Lemeshow test  7.1.1 ROCandHL.R

CASE STUDY: The Water Level Study
Logistic Regression Analyses

Water Level Study 2 (.doc)
Model Selection: Backward & Stepwise Procedures

 WaterStudyLogisticRegression.pdf

 WaterStudyModelSelection.pdf

Datafile: water_level.txt

 7.1.1
Logistic regression  7.2.1
Baseline-category logit model  8.2.2

alligator.R

gator.txt
alligator.dat

Proportional-odds cumulative logit model  8.4.1 cheese.dat
cheese.r
Proportional-odds cumulative logit model
Datafile: abortion.txt
8.4.2 abortion.r
Poisson Regression  9.2
Poisson Regression with rates
Datafile: creditcard.txt
 9.3
CASE STUDY: The Ice Cream Study at Penn State
 

CASE STUDY: Stress and Smoking

Datafile: stress.txt

   
Loglinear models for 2 × 2 tables  10.1.2 VitaminCLoglin.R
VitaminCLoglin.out
Loglinear model of independence for two-way table  10.1.3 vote.R
Loglinear models 3-way tables  10.2 berkeleyLoglin.R

Loglinear models; model assessment and selection
Datafile: collar.txt

 10.2.9

collar.out

Sparse data: Sampling & Structural Zeros  11.1.1 ZerosEx.R
Sparse data: Incomplete table analysis  11.1.3 health.R
health3.R
Ordinal data: Linear by linear association model  11.2.1 HeartDiseaseLoglin.R
Dependent data: loglinear models  11.3.2 movies.R
Dependent data: quasi-independence loglinear model  11.3.5 monkey.R